Software
slendr: Geographically-explicit spatiotemporal simulation of genomic data
PaleoProPhyler: A reproducible pipeline for phylogenetic analysis of ancient proteins
GRoSS: Detection of single-locus positive selection in complex admixture graphs
PolyGraph: Detection of polygenic adaptation in complex admixture graphs
3P-CLR: Method to detect ancient and recent selection in a three-population tree.
DICE: Joint estimation of contamination, error and demography for nuclear DNA from ancient humans.